Index

_

__enter__() (monarchs.core.driver.Timer method) __exit__() (monarchs.core.driver.Timer method) _DIR_COL (in module monarchs.physics.lateral.directions)

_DIR_ROW (in module monarchs.physics.lateral.directions) _KERNELS (in module monarchs.core.kernels) _N_DIRS (in module monarchs.physics.lateral.directions)

B

bare_ice_albedo (in module monarchs.physics.constants) built-in function loop_over_grid.loop_over_grid_numba() monarchs.core.configuration.create_defaults_for_missing_flags() monarchs.core.configuration.create_output_folders() monarchs.core.configuration.handle_incompatible_flags() monarchs.core.configuration.handle_invalid_values() monarchs.core.configuration.parse_args() monarchs.core.debug.neighbourhood_check() monarchs.core.diagnostics.check_firn_met_consistency() monarchs.core.diagnostics.print_model_end_of_timestep_messages() monarchs.core.driver.lateral_movement_step() monarchs.core.driver.monarchs() monarchs.core.driver.run_model() monarchs.core.driver.setup_parallelism() monarchs.core.driver.setup_toggle_dict() monarchs.core.driver.single_column_step() monarchs.core.driver.validate_visits() monarchs.core.driver.write_outputs() monarchs.core.error_handling.calc_grid_mass() monarchs.core.error_handling.check_correct() monarchs.core.error_handling.check_for_mass_conservation() monarchs.core.error_handling.check_for_single_column_errors() monarchs.core.error_handling.check_grid_correctness() monarchs.core.error_handling.generic_error() monarchs.core.initial_conditions.check_for_isolated_cells() monarchs.core.initial_conditions.create_model_grid() monarchs.core.initial_conditions.initialise_firn_profile() monarchs.core.initial_conditions.rho_init_emp() monarchs.core.initialise.check_for_reload_from_dump() monarchs.core.initialise.initialise_model_data() monarchs.core.kernels.compile_all() monarchs.core.kernels.kernel() monarchs.core.load_model_setup.get_model_setup() monarchs.core.loop_over_grid.chunk_grid() monarchs.core.loop_over_grid.loop_over_grid() monarchs.core.loop_over_grid.process_chunk() monarchs.core.model_grid.get_spec() monarchs.core.model_grid.initialise_iceshelf() monarchs.core.utils.add_edge_water() monarchs.core.utils.add_random_water() monarchs.core.utils.calc_mass_sum() monarchs.core.utils.find_nearest() monarchs.core.utils.get_2d_grid() monarchs.core.utils.get_num_cores() monarchs.core.utils.memory_tracker() monarchs.dem_utils.create_dem_gaussian_test_case.export_gaussian_dem() monarchs.dem_utils.create_dem_gaussian_test_case.interpolate_func_to_dem() monarchs.dem_utils.create_dem_planar_test_case.export_planar_dem() monarchs.dem_utils.load_dem.bounding_box_diagnostic_plots() monarchs.dem_utils.load_dem.export_DEM() monarchs.dem_utils.load_dem.generate_diagnostic_plots() monarchs.dem_utils.load_dem.get_xy_distance() monarchs.dem_utils.load_dem.interpolate_DEM() monarchs.io.append_output() monarchs.io.checkpoint.read_checkpoint() monarchs.io.checkpoint.write_checkpoint() monarchs.io.initialise_output() monarchs.io.netcdf_utils.create_grid_dimensions() monarchs.io.netcdf_utils.extract_field() monarchs.io.netcdf_utils.is_vector_field() monarchs.io.netcdf_utils.netcdf_dtype() monarchs.io.netcdf_utils.variable_dimensions() monarchs.io.output.add_lat_long() monarchs.io.output.append_output() monarchs.io.output.create_variable() monarchs.io.output.initialise_output() monarchs.io.output.interpolate_model_output() monarchs.io.read_checkpoint() monarchs.io.write_checkpoint() monarchs.physics.firn.firn_column.calc_height_change() monarchs.physics.firn.firn_column.firn_column() monarchs.physics.firn.heateqn._firn_jacobian() monarchs.physics.firn.heateqn._firn_residual() monarchs.physics.firn.heateqn.firn_heateqn_solver() monarchs.physics.firn.heateqn.heateqn_firn() monarchs.physics.firn.heateqn.newton_jacobian_firn() monarchs.physics.firn.percolation.calc_liquid_mass() monarchs.physics.firn.percolation.calc_refreezing() monarchs.physics.firn.percolation.calc_saturation() monarchs.physics.firn.percolation.calc_solid_mass() monarchs.physics.firn.percolation.capillary() monarchs.physics.firn.percolation.perc_time() monarchs.physics.firn.percolation.percolate() monarchs.physics.firn.regrid_column._integrate_piecewise_constant() monarchs.physics.firn.regrid_column.conservative_regrid() monarchs.physics.firn.regrid_column.merge_cells_into_lake() monarchs.physics.firn.regrid_column.regrid_after_freeze() monarchs.physics.firn.regrid_column.regrid_after_melt() monarchs.physics.firn.snow_accumulation.densification() monarchs.physics.firn.snow_accumulation.snowfall() monarchs.physics.lake.development.calc_height_adjustment() monarchs.physics.lake.development.lake_development() monarchs.physics.lake.development.radiative_transfer() monarchs.physics.lake.development.turbulent_mixing() monarchs.physics.lake.formation.lake_formation() monarchs.physics.lake.lake_development() monarchs.physics.lake.lake_formation() monarchs.physics.lake.radiative_transfer() monarchs.physics.lake.seb.lake_development_eqn() monarchs.physics.lake.seb.lake_formation_eqn() monarchs.physics.lake.seb.lake_seb_solver() monarchs.physics.lake.turbulent_mixing() monarchs.physics.lateral.available_water.calc_available_water_ice_lens() monarchs.physics.lateral.available_water.calc_available_water_lake() monarchs.physics.lateral.available_water.calc_catchment_outflow() monarchs.physics.lateral.available_water.water_fraction() monarchs.physics.lateral.move_water() monarchs.physics.lateral.move_water.move_water() monarchs.physics.lateral.neighbours.find_biggest_neighbour() monarchs.physics.lateral.neighbours.get_neighbour_water_levels() monarchs.physics.lateral.transfer.handle_edge_cases() monarchs.physics.lateral.transfer.handle_invalid_neighbour_cell() monarchs.physics.lateral.transfer.move_from_ice_lens() monarchs.physics.lateral.transfer.move_from_lake() monarchs.physics.lateral.transfer.move_to_neighbours() monarchs.physics.lateral.water_level.update_water_level() monarchs.physics.lid.heateqn._lid_jacobian() monarchs.physics.lid.heateqn._lid_residual() monarchs.physics.lid.heateqn.heateqn_lid() monarchs.physics.lid.heateqn.lid_heateqn_solver() monarchs.physics.lid.heateqn.newton_jacobian_lid() monarchs.physics.lid.lid.adjust_lid_height() monarchs.physics.lid.lid.calc_k_and_cp() monarchs.physics.lid.lid.initialise_lid() monarchs.physics.lid.lid.interpolate_profiles() monarchs.physics.lid.lid.lid_development() monarchs.physics.lid.lid.surface_freezing() monarchs.physics.lid.lid.surface_melt() monarchs.physics.lid.lid_development() monarchs.physics.lid.seb.lid_seb_solver() monarchs.physics.lid.seb.sfc_energy_lid() monarchs.physics.lid.seb.sfc_energy_virtual_lid() monarchs.physics.lid.virtual_lid.freeze_virtual_lid() monarchs.physics.lid.virtual_lid.melt_virtual_lid() monarchs.physics.lid.virtual_lid.update_virtual_lid_temperature() monarchs.physics.lid.virtual_lid.virtual_lid_development() monarchs.physics.lid.virtual_lid_development() monarchs.physics.material_properties.cp_ice() monarchs.physics.material_properties.cv_mixture() monarchs.physics.material_properties.k_and_kappa() monarchs.physics.material_properties.k_ice() monarchs.physics.material_properties.k_mixture() monarchs.physics.reset_column.combine_lid_firn() monarchs.physics.reset_column.mass_conserving_profile() monarchs.physics.solver.newton_scalar() monarchs.physics.solver.newton_tridiagonal() monarchs.physics.solver.solve_tridiagonal() monarchs.physics.surface_fluxes.bulk_fluxes() monarchs.physics.surface_fluxes.sfc_albedo() monarchs.physics.surface_fluxes.sfc_flux() monarchs.physics.timestep.timestep_loop() monarchs.run_monarchs.run_from_cli()

C

check_file_exists() (monarchs.core.load_model_setup.ModelSetup method) check_for_key_variables() (monarchs.core.load_model_setup.ModelSetup method)

CLIENT (in module monarchs.core.driver) cp_air (in module monarchs.physics.constants) cp_water (in module monarchs.physics.constants)

D

DEFAULT_VARS (in module monarchs.io.output)

DQ_DT_STEP (in module monarchs.physics.solver) dry_snow_albedo (in module monarchs.physics.constants)

E

emissivity (in module monarchs.physics.constants)

errors (monarchs.core.load_model_setup.ModelSetup attribute) eta_water (in module monarchs.physics.constants)

F

FD_STEP (in module monarchs.physics.solver)

FTOL (in module monarchs.physics.solver)

G

g (in module monarchs.physics.constants)

H

h (in module monarchs.dem_utils.create_dem_gaussian_test_case) (in module monarchs.dem_utils.create_dem_planar_test_case)

J

J (in module monarchs.physics.constants)

K

k_air (in module monarchs.physics.constants)

k_water (in module monarchs.physics.constants)

L

L_ice (in module monarchs.physics.constants) label (monarchs.core.driver.Timer attribute) logger (in module monarchs.core.driver)

loop_over_grid module loop_over_grid.loop_over_grid_numba() built-in function

M

module loop_over_grid monarchs monarchs.core monarchs.core.configuration monarchs.core.debug monarchs.core.diagnostics monarchs.core.driver monarchs.core.error_handling monarchs.core.initial_conditions monarchs.core.initialise monarchs.core.kernels monarchs.core.load_model_setup monarchs.core.loop_over_grid monarchs.core.model_grid monarchs.core.utils monarchs.dem_utils monarchs.dem_utils.create_dem_gaussian_test_case monarchs.dem_utils.create_dem_planar_test_case monarchs.dem_utils.load_dem monarchs.io monarchs.io.checkpoint monarchs.io.netcdf_utils monarchs.io.output monarchs.physics monarchs.physics.constants monarchs.physics.firn monarchs.physics.firn.firn_column monarchs.physics.firn.heateqn monarchs.physics.firn.percolation monarchs.physics.firn.regrid_column monarchs.physics.firn.snow_accumulation monarchs.physics.lake monarchs.physics.lake.development monarchs.physics.lake.formation monarchs.physics.lake.seb monarchs.physics.lateral monarchs.physics.lateral.available_water monarchs.physics.lateral.directions monarchs.physics.lateral.neighbours monarchs.physics.lateral.transfer monarchs.physics.lateral.water_level monarchs.physics.lid monarchs.physics.lid.heateqn monarchs.physics.lid.lid monarchs.physics.lid.seb monarchs.physics.lid.virtual_lid monarchs.physics.material_properties monarchs.physics.reset_column monarchs.physics.solver monarchs.physics.surface_fluxes monarchs.physics.timestep monarchs.run_monarchs MODULE_NAME (in module monarchs.core.load_model_setup) (in module monarchs.physics.firn.firn_column) (in module monarchs.physics.firn.percolation) (in module monarchs.physics.firn.snow_accumulation) (in module monarchs.physics.lake.development) (in module monarchs.physics.lake.formation) (in module monarchs.physics.lid.lid) (in module monarchs.physics.lid.virtual_lid) (in module monarchs.physics.timestep) monarchs module monarchs.core module monarchs.core.configuration module monarchs.core.configuration.create_defaults_for_missing_flags() built-in function monarchs.core.configuration.create_output_folders() built-in function monarchs.core.configuration.handle_incompatible_flags() built-in function monarchs.core.configuration.handle_invalid_values() built-in function monarchs.core.configuration.parse_args() built-in function monarchs.core.debug module monarchs.core.debug.neighbourhood_check() built-in function monarchs.core.diagnostics module monarchs.core.diagnostics.check_firn_met_consistency() built-in function monarchs.core.diagnostics.print_model_end_of_timestep_messages() built-in function monarchs.core.driver module monarchs.core.driver.lateral_movement_step() built-in function monarchs.core.driver.monarchs() built-in function monarchs.core.driver.run_model() built-in function monarchs.core.driver.setup_parallelism() built-in function monarchs.core.driver.setup_toggle_dict() built-in function monarchs.core.driver.single_column_step() built-in function monarchs.core.driver.Timer (built-in class) monarchs.core.driver.validate_visits() built-in function monarchs.core.driver.write_outputs() built-in function monarchs.core.error_handling module monarchs.core.error_handling.calc_grid_mass() built-in function monarchs.core.error_handling.check_correct() built-in function monarchs.core.error_handling.check_for_mass_conservation() built-in function monarchs.core.error_handling.check_for_single_column_errors() built-in function monarchs.core.error_handling.check_grid_correctness() built-in function monarchs.core.error_handling.generic_error() built-in function monarchs.core.initial_conditions module monarchs.core.initial_conditions.check_for_isolated_cells() built-in function monarchs.core.initial_conditions.create_model_grid() built-in function monarchs.core.initial_conditions.initialise_firn_profile() built-in function monarchs.core.initial_conditions.rho_init_emp() built-in function monarchs.core.initialise module monarchs.core.initialise.check_for_reload_from_dump() built-in function monarchs.core.initialise.initialise_model_data() built-in function monarchs.core.kernels module monarchs.core.kernels.compile_all() built-in function monarchs.core.kernels.kernel() built-in function monarchs.core.load_model_setup module monarchs.core.load_model_setup.get_model_setup() built-in function monarchs.core.load_model_setup.ModelSetup (built-in class) monarchs.core.loop_over_grid module monarchs.core.loop_over_grid.chunk_grid() built-in function monarchs.core.loop_over_grid.loop_over_grid() built-in function monarchs.core.loop_over_grid.process_chunk() built-in function monarchs.core.model_grid module monarchs.core.model_grid.get_spec() built-in function monarchs.core.model_grid.initialise_iceshelf() built-in function monarchs.core.utils module monarchs.core.utils.add_edge_water() built-in function monarchs.core.utils.add_random_water() built-in function monarchs.core.utils.calc_mass_sum() built-in function monarchs.core.utils.find_nearest() built-in function monarchs.core.utils.get_2d_grid() built-in function monarchs.core.utils.get_num_cores() built-in function monarchs.core.utils.memory_tracker() built-in function monarchs.dem_utils module monarchs.dem_utils.create_dem_gaussian_test_case module monarchs.dem_utils.create_dem_gaussian_test_case.export_gaussian_dem() built-in function monarchs.dem_utils.create_dem_gaussian_test_case.interpolate_func_to_dem() built-in function monarchs.dem_utils.create_dem_planar_test_case module monarchs.dem_utils.create_dem_planar_test_case.export_planar_dem() built-in function monarchs.dem_utils.load_dem module monarchs.dem_utils.load_dem.bounding_box_diagnostic_plots() built-in function monarchs.dem_utils.load_dem.export_DEM() built-in function monarchs.dem_utils.load_dem.generate_diagnostic_plots() built-in function monarchs.dem_utils.load_dem.get_xy_distance() built-in function monarchs.dem_utils.load_dem.interpolate_DEM() built-in function monarchs.io module monarchs.io.append_output() built-in function monarchs.io.checkpoint module monarchs.io.checkpoint.read_checkpoint() built-in function monarchs.io.checkpoint.write_checkpoint() built-in function monarchs.io.initialise_output() built-in function monarchs.io.netcdf_utils module monarchs.io.netcdf_utils.create_grid_dimensions() built-in function monarchs.io.netcdf_utils.extract_field() built-in function monarchs.io.netcdf_utils.is_vector_field() built-in function monarchs.io.netcdf_utils.netcdf_dtype() built-in function monarchs.io.netcdf_utils.variable_dimensions() built-in function monarchs.io.output module monarchs.io.output.add_lat_long() built-in function monarchs.io.output.append_output() built-in function monarchs.io.output.create_variable() built-in function

monarchs.io.output.initialise_output() built-in function monarchs.io.output.interpolate_model_output() built-in function monarchs.io.read_checkpoint() built-in function monarchs.io.write_checkpoint() built-in function monarchs.physics module monarchs.physics.constants module monarchs.physics.firn module monarchs.physics.firn.firn_column module monarchs.physics.firn.firn_column.calc_height_change() built-in function monarchs.physics.firn.firn_column.firn_column() built-in function monarchs.physics.firn.heateqn module monarchs.physics.firn.heateqn._firn_jacobian() built-in function monarchs.physics.firn.heateqn._firn_residual() built-in function monarchs.physics.firn.heateqn.firn_heateqn_solver() built-in function monarchs.physics.firn.heateqn.heateqn_firn() built-in function monarchs.physics.firn.heateqn.newton_jacobian_firn() built-in function monarchs.physics.firn.percolation module monarchs.physics.firn.percolation.calc_liquid_mass() built-in function monarchs.physics.firn.percolation.calc_refreezing() built-in function monarchs.physics.firn.percolation.calc_saturation() built-in function monarchs.physics.firn.percolation.calc_solid_mass() built-in function monarchs.physics.firn.percolation.capillary() built-in function monarchs.physics.firn.percolation.perc_time() built-in function monarchs.physics.firn.percolation.percolate() built-in function monarchs.physics.firn.regrid_column module monarchs.physics.firn.regrid_column._integrate_piecewise_constant() built-in function monarchs.physics.firn.regrid_column.conservative_regrid() built-in function monarchs.physics.firn.regrid_column.merge_cells_into_lake() built-in function monarchs.physics.firn.regrid_column.regrid_after_freeze() built-in function monarchs.physics.firn.regrid_column.regrid_after_melt() built-in function monarchs.physics.firn.snow_accumulation module monarchs.physics.firn.snow_accumulation.densification() built-in function monarchs.physics.firn.snow_accumulation.snowfall() built-in function monarchs.physics.lake module monarchs.physics.lake.development module monarchs.physics.lake.development.calc_height_adjustment() built-in function monarchs.physics.lake.development.lake_development() built-in function monarchs.physics.lake.development.radiative_transfer() built-in function monarchs.physics.lake.development.turbulent_mixing() built-in function monarchs.physics.lake.formation module monarchs.physics.lake.formation.lake_formation() built-in function monarchs.physics.lake.lake_development() built-in function monarchs.physics.lake.lake_formation() built-in function monarchs.physics.lake.radiative_transfer() built-in function monarchs.physics.lake.seb module monarchs.physics.lake.seb.lake_development_eqn() built-in function monarchs.physics.lake.seb.lake_formation_eqn() built-in function monarchs.physics.lake.seb.lake_seb_solver() built-in function monarchs.physics.lake.turbulent_mixing() built-in function monarchs.physics.lateral module monarchs.physics.lateral.available_water module monarchs.physics.lateral.available_water.calc_available_water_ice_lens() built-in function monarchs.physics.lateral.available_water.calc_available_water_lake() built-in function monarchs.physics.lateral.available_water.calc_catchment_outflow() built-in function monarchs.physics.lateral.available_water.water_fraction() built-in function monarchs.physics.lateral.directions module monarchs.physics.lateral.move_water() built-in function monarchs.physics.lateral.move_water.move_water() built-in function monarchs.physics.lateral.neighbours module monarchs.physics.lateral.neighbours.find_biggest_neighbour() built-in function monarchs.physics.lateral.neighbours.get_neighbour_water_levels() built-in function monarchs.physics.lateral.transfer module monarchs.physics.lateral.transfer.handle_edge_cases() built-in function monarchs.physics.lateral.transfer.handle_invalid_neighbour_cell() built-in function monarchs.physics.lateral.transfer.move_from_ice_lens() built-in function monarchs.physics.lateral.transfer.move_from_lake() built-in function monarchs.physics.lateral.transfer.move_to_neighbours() built-in function monarchs.physics.lateral.water_level module monarchs.physics.lateral.water_level.update_water_level() built-in function monarchs.physics.lid module monarchs.physics.lid.heateqn module monarchs.physics.lid.heateqn._lid_jacobian() built-in function monarchs.physics.lid.heateqn._lid_residual() built-in function monarchs.physics.lid.heateqn.heateqn_lid() built-in function monarchs.physics.lid.heateqn.lid_heateqn_solver() built-in function monarchs.physics.lid.heateqn.newton_jacobian_lid() built-in function monarchs.physics.lid.lid module monarchs.physics.lid.lid.adjust_lid_height() built-in function monarchs.physics.lid.lid.calc_k_and_cp() built-in function monarchs.physics.lid.lid.initialise_lid() built-in function monarchs.physics.lid.lid.interpolate_profiles() built-in function monarchs.physics.lid.lid.lid_development() built-in function monarchs.physics.lid.lid.surface_freezing() built-in function monarchs.physics.lid.lid.surface_melt() built-in function monarchs.physics.lid.lid_development() built-in function monarchs.physics.lid.seb module monarchs.physics.lid.seb.lid_seb_solver() built-in function monarchs.physics.lid.seb.sfc_energy_lid() built-in function monarchs.physics.lid.seb.sfc_energy_virtual_lid() built-in function monarchs.physics.lid.virtual_lid module monarchs.physics.lid.virtual_lid.freeze_virtual_lid() built-in function monarchs.physics.lid.virtual_lid.melt_virtual_lid() built-in function monarchs.physics.lid.virtual_lid.update_virtual_lid_temperature() built-in function monarchs.physics.lid.virtual_lid.virtual_lid_development() built-in function monarchs.physics.lid.virtual_lid_development() built-in function monarchs.physics.material_properties module monarchs.physics.material_properties.cp_ice() built-in function monarchs.physics.material_properties.cv_mixture() built-in function monarchs.physics.material_properties.k_and_kappa() built-in function monarchs.physics.material_properties.k_ice() built-in function monarchs.physics.material_properties.k_mixture() built-in function monarchs.physics.reset_column module monarchs.physics.reset_column.combine_lid_firn() built-in function monarchs.physics.reset_column.mass_conserving_profile() built-in function monarchs.physics.solver module monarchs.physics.solver.newton_scalar() built-in function monarchs.physics.solver.newton_tridiagonal() built-in function monarchs.physics.solver.solve_tridiagonal() built-in function monarchs.physics.surface_fluxes module monarchs.physics.surface_fluxes.bulk_fluxes() built-in function monarchs.physics.surface_fluxes.sfc_albedo() built-in function monarchs.physics.surface_fluxes.sfc_flux() built-in function monarchs.physics.timestep module monarchs.physics.timestep.timestep_loop() built-in function monarchs.run_monarchs module monarchs.run_monarchs.run_from_cli() built-in function

P

pore_closure (in module monarchs.physics.constants)

R

rho_air (in module monarchs.physics.constants)

rho_ice (in module monarchs.physics.constants) rho_water (in module monarchs.physics.constants)

S

saturated_firn_albedo (in module monarchs.physics.constants) script_path (monarchs.core.load_model_setup.ModelSetup attribute) sfc_absorbed_frac (in module monarchs.physics.constants)

SOLVER_MAXITER (in module monarchs.physics.solver) SOLVER_TOL (in module monarchs.physics.solver) stefan_boltzmann (in module monarchs.physics.constants)

T

tau_ice (in module monarchs.physics.constants)

tau_water (in module monarchs.physics.constants)

V

v_lid_min_thickness (in module monarchs.physics.constants)

validate_model_setup() (monarchs.core.load_model_setup.ModelSetup method)

W

wet_snow_albedo (in module monarchs.physics.constants)

X

XTOL (in module monarchs.physics.solver)