Index

B

bare_ice_albedo (in module monarchs.physics.constants) built-in function extract_args.extract_firn_arrays() extract_args.extract_lake_variables() extract_args.extract_lid_variables() extract_args.extract_met_data() extract_args.extract_scalars() extract_args.pack_args() heateqn_nb.get_k_and_kappa() heateqn_nb.heateqn() heateqn_nb.heateqn_lid() heateqn_nb.propagate_temperature() heateqn_nb.solve_tridiagonal() loop_over_grid.loop_over_grid_numba() monarchs.core.configuration.create_defaults_for_missing_flags() monarchs.core.configuration.create_output_folders() monarchs.core.configuration.handle_incompatible_flags() monarchs.core.configuration.handle_invalid_values() monarchs.core.configuration.jit_modules() monarchs.core.configuration.parse_args() monarchs.core.debug.neighbourhood_check() monarchs.core.driver.check_firn_met_consistency() monarchs.core.driver.check_for_reload_from_dump() monarchs.core.driver.get_snow_sum() monarchs.core.driver.initialise_model_data() monarchs.core.driver.main() monarchs.core.driver.monarchs() monarchs.core.driver.print_model_end_of_timestep_messages() monarchs.core.driver.setup_toggle_dict() monarchs.core.driver.update_met_conditions() monarchs.core.dump_model_state.dump_state() monarchs.core.dump_model_state.reload_from_dump() monarchs.core.error_handling.calc_grid_mass() monarchs.core.error_handling.check_correct() monarchs.core.error_handling.check_for_mass_conservation() monarchs.core.error_handling.check_for_single_column_errors() monarchs.core.error_handling.check_grid_correctness() monarchs.core.error_handling.generic_error() monarchs.core.initial_conditions.check_for_isolated_cells() monarchs.core.initial_conditions.create_model_grid() monarchs.core.initial_conditions.initialise_firn_profile() monarchs.core.initial_conditions.rho_init_emp() monarchs.core.load_model_setup.get_model_setup() monarchs.core.loop_over_grid.chunk_grid() monarchs.core.loop_over_grid.loop_over_grid() monarchs.core.loop_over_grid.process_chunk() monarchs.core.model_grid.get_spec() monarchs.core.model_grid.initialise_iceshelf() monarchs.core.model_output.add_lat_long() monarchs.core.model_output.convert_bool_dtypes() monarchs.core.model_output.create_dimensions() monarchs.core.model_output.create_variable() monarchs.core.model_output.get_variable_dims() monarchs.core.model_output.interpolate_model_output() monarchs.core.model_output.setup_output() monarchs.core.model_output.update_model_output() monarchs.core.utils.add_edge_water() monarchs.core.utils.add_random_water() monarchs.core.utils.calc_mass_sum() monarchs.core.utils.check_energy_conservation() monarchs.core.utils.do_not_jit() monarchs.core.utils.find_nearest() monarchs.core.utils.get_2d_grid() monarchs.core.utils.get_num_cores() monarchs.core.utils.memory_tracker() monarchs.core.utils.spinup() monarchs.dem_utils.create_dem_gaussian_test_case.export_gaussian_dem() monarchs.dem_utils.create_dem_gaussian_test_case.interpolate_func_to_dem() monarchs.dem_utils.create_dem_planar_test_case.export_planar_dem() monarchs.dem_utils.load_dem.bounding_box_diagnostic_plots() monarchs.dem_utils.load_dem.export_DEM() monarchs.dem_utils.load_dem.generate_diagnostic_plots() monarchs.dem_utils.load_dem.get_xy_distance() monarchs.dem_utils.load_dem.interpolate_DEM() monarchs.physics.firn_column.calc_height_change() monarchs.physics.firn_column.firn_column() monarchs.physics.heateqn.get_k_and_kappa() monarchs.physics.heateqn.heateqn() monarchs.physics.heateqn.heateqn_lid() monarchs.physics.heateqn.propagate_temperature() monarchs.physics.heateqn.solve_tridiagonal() monarchs.physics.lake.calc_height_adjustment() monarchs.physics.lake.freeze_pre_lake() monarchs.physics.lake.lake_development() monarchs.physics.lake.lake_formation() monarchs.physics.lake.radiative_transfer() monarchs.physics.lake.turbulent_mixing() monarchs.physics.lateral_movement.calc_available_water_ice_lens() monarchs.physics.lateral_movement.calc_available_water_lake() monarchs.physics.lateral_movement.calc_catchment_outflow() monarchs.physics.lateral_movement.find_biggest_neighbour() monarchs.physics.lateral_movement.get_neighbour_water_levels() monarchs.physics.lateral_movement.handle_edge_cases() monarchs.physics.lateral_movement.handle_invalid_neighbour_cell() monarchs.physics.lateral_movement.move_from_ice_lens() monarchs.physics.lateral_movement.move_from_lake() monarchs.physics.lateral_movement.move_to_neighbours() monarchs.physics.lateral_movement.move_water() monarchs.physics.lateral_movement.update_water_level() monarchs.physics.lateral_movement.water_fraction() monarchs.physics.lid.adjust_lid_height() monarchs.physics.lid.calc_k_and_cp() monarchs.physics.lid.initialise_lid() monarchs.physics.lid.interpolate_profiles() monarchs.physics.lid.lid_development() monarchs.physics.lid.surface_freezing() monarchs.physics.lid.surface_melt() monarchs.physics.percolation.calc_liquid_mass() monarchs.physics.percolation.calc_refreezing() monarchs.physics.percolation.calc_saturation() monarchs.physics.percolation.calc_solid_mass() monarchs.physics.percolation.capillary() monarchs.physics.percolation.perc_time() monarchs.physics.percolation.percolate() monarchs.physics.regrid_column._integrate_piecewise_constant() monarchs.physics.regrid_column.conservative_regrid() monarchs.physics.regrid_column.merge_cells_into_lake() monarchs.physics.regrid_column.regrid_after_freeze() monarchs.physics.regrid_column.regrid_after_melt() monarchs.physics.reset_column.combine_lid_firn() monarchs.physics.reset_column.mass_conserving_profile() monarchs.physics.snow_accumulation.densification() monarchs.physics.snow_accumulation.snowfall() monarchs.physics.solver.lake_development_eqn() monarchs.physics.solver.lake_formation_eqn() monarchs.physics.solver.lake_seb_solver() monarchs.physics.solver.lid_heateqn_solver() monarchs.physics.solver.lid_seb_solver() monarchs.physics.solver.sfc_energy_lid() monarchs.physics.solver.sfc_energy_virtual_lid() monarchs.physics.solver.solve_firn_heateqn() monarchs.physics.surface_fluxes.bulk_fluxes() monarchs.physics.surface_fluxes.sfc_albedo() monarchs.physics.surface_fluxes.sfc_flux() monarchs.physics.timestep.timestep_loop() monarchs.physics.virtual_lid.freeze_virtual_lid() monarchs.physics.virtual_lid.melt_virtual_lid() monarchs.physics.virtual_lid.update_virtual_lid_temperature() monarchs.physics.virtual_lid.virtual_lid_development() monarchs.run_monarchs.run_from_cli() solver_nb.lake_seb_solver() solver_nb.lid_heateqn_solver() solver_nb.lid_seb_solver() solver_nb.solve_firn_heateqn() surface_energy_balance.lake_development_eqn() surface_energy_balance.lake_formation_eqn() surface_energy_balance.sfc_energy_lid() surface_energy_balance.sfc_energy_virtual_lid()

C

check_file_exists() (monarchs.core.load_model_setup.ModelSetup method) check_for_key_variables() (monarchs.core.load_model_setup.ModelSetup method) check_for_unexpected_imports() (monarchs.core.load_model_setup.ModelSetup method)

CLIENT (in module monarchs.core.driver) cp_air (in module monarchs.physics.constants) cp_water (in module monarchs.physics.constants)

D

DEFAULT_VARS (in module monarchs.core.model_output) dev_eqn_cfunc (in module solver_nb)

dev_eqnaddress (in module solver_nb) dry_snow_albedo (in module monarchs.physics.constants)

E

emissivity (in module monarchs.physics.constants) errors (monarchs.core.load_model_setup.ModelSetup attribute) extract_args module extract_args.extract_firn_arrays() built-in function extract_args.extract_lake_variables() built-in function

extract_args.extract_lid_variables() built-in function extract_args.extract_met_data() built-in function extract_args.extract_scalars() built-in function extract_args.pack_args() built-in function

F

form_eqn_cfunc (in module solver_nb)

form_eqnaddress (in module solver_nb)

H

h (in module monarchs.dem_utils.create_dem_gaussian_test_case) (in module monarchs.dem_utils.create_dem_planar_test_case) HEADER_SIZE (in module extract_args) heateqn (in module heateqn_nb) heateqn_lid (in module heateqn_nb) heateqn_nb module heateqn_nb.get_k_and_kappa() built-in function

heateqn_nb.heateqn() built-in function heateqn_nb.heateqn_lid() built-in function heateqn_nb.propagate_temperature() built-in function heateqn_nb.solve_tridiagonal() built-in function heq (in module solver_nb) heqlid (in module solver_nb)

I

ice_extinction_coefficient (in module monarchs.physics.constants) IDX_AIR_TEMP (in module extract_args) IDX_ALBEDO (in module extract_args) IDX_DP_TEMP (in module extract_args) IDX_DT (in module extract_args) IDX_DZ (in module extract_args) IDX_EXPOSED_WATER (in module extract_args) IDX_FIRN_DEPTH (in module extract_args) IDX_K_LID_SCALAR (in module extract_args) IDX_LAKE (in module extract_args) IDX_LAKE_DEPTH (in module extract_args) IDX_LID (in module extract_args)

IDX_LID_DEPTH (in module extract_args) IDX_LW_IN (in module extract_args) IDX_MELT (in module extract_args) IDX_N_GRID (in module extract_args) IDX_P_AIR (in module extract_args) IDX_SCALARS_END (in module extract_args) IDX_SFRAC_LID_SCALAR (in module extract_args) IDX_SNOW_LID (in module extract_args) IDX_SW_IN (in module extract_args) IDX_V_LID (in module extract_args) IDX_V_LID_DEPTH (in module extract_args) IDX_V_LID_TEMP (in module extract_args) IDX_WIND (in module extract_args)

K

k_air (in module monarchs.physics.constants)

k_water (in module monarchs.physics.constants)

L

L_ice (in module monarchs.physics.constants) loop_over_grid module

loop_over_grid.loop_over_grid_numba() built-in function

M

module extract_args heateqn_nb loop_over_grid monarchs monarchs.core monarchs.core.configuration monarchs.core.debug monarchs.core.driver monarchs.core.dump_model_state monarchs.core.error_handling monarchs.core.initial_conditions monarchs.core.load_model_setup monarchs.core.loop_over_grid monarchs.core.model_grid monarchs.core.model_output monarchs.core.utils monarchs.dem_utils monarchs.dem_utils.create_dem_gaussian_test_case monarchs.dem_utils.create_dem_planar_test_case monarchs.dem_utils.load_dem monarchs.physics monarchs.physics.constants monarchs.physics.firn_column monarchs.physics.heateqn monarchs.physics.lake monarchs.physics.lateral_movement monarchs.physics.lid monarchs.physics.percolation monarchs.physics.regrid_column monarchs.physics.reset_column monarchs.physics.snow_accumulation monarchs.physics.solver monarchs.physics.surface_fluxes monarchs.physics.timestep monarchs.physics.virtual_lid monarchs.run_monarchs solver_nb surface_energy_balance MODULE_NAME (in module monarchs.core.load_model_setup) (in module monarchs.physics.firn_column) (in module monarchs.physics.lake) (in module monarchs.physics.lid) (in module monarchs.physics.percolation) (in module monarchs.physics.snow_accumulation) (in module monarchs.physics.timestep) (in module monarchs.physics.virtual_lid) monarchs module monarchs.core module monarchs.core.configuration module monarchs.core.configuration.create_defaults_for_missing_flags() built-in function monarchs.core.configuration.create_output_folders() built-in function monarchs.core.configuration.handle_incompatible_flags() built-in function monarchs.core.configuration.handle_invalid_values() built-in function monarchs.core.configuration.jit_modules() built-in function monarchs.core.configuration.parse_args() built-in function monarchs.core.debug module monarchs.core.debug.neighbourhood_check() built-in function monarchs.core.driver module monarchs.core.driver.check_firn_met_consistency() built-in function monarchs.core.driver.check_for_reload_from_dump() built-in function monarchs.core.driver.get_snow_sum() built-in function monarchs.core.driver.initialise_model_data() built-in function monarchs.core.driver.main() built-in function monarchs.core.driver.monarchs() built-in function monarchs.core.driver.print_model_end_of_timestep_messages() built-in function monarchs.core.driver.setup_toggle_dict() built-in function monarchs.core.driver.update_met_conditions() built-in function monarchs.core.dump_model_state module monarchs.core.dump_model_state.dump_state() built-in function monarchs.core.dump_model_state.reload_from_dump() built-in function monarchs.core.error_handling module monarchs.core.error_handling.calc_grid_mass() built-in function monarchs.core.error_handling.check_correct() built-in function monarchs.core.error_handling.check_for_mass_conservation() built-in function monarchs.core.error_handling.check_for_single_column_errors() built-in function monarchs.core.error_handling.check_grid_correctness() built-in function monarchs.core.error_handling.generic_error() built-in function monarchs.core.initial_conditions module monarchs.core.initial_conditions.check_for_isolated_cells() built-in function monarchs.core.initial_conditions.create_model_grid() built-in function monarchs.core.initial_conditions.initialise_firn_profile() built-in function monarchs.core.initial_conditions.rho_init_emp() built-in function monarchs.core.load_model_setup module monarchs.core.load_model_setup.get_model_setup() built-in function monarchs.core.load_model_setup.ModelSetup (built-in class) monarchs.core.loop_over_grid module monarchs.core.loop_over_grid.chunk_grid() built-in function monarchs.core.loop_over_grid.loop_over_grid() built-in function monarchs.core.loop_over_grid.process_chunk() built-in function monarchs.core.model_grid module monarchs.core.model_grid.get_spec() built-in function monarchs.core.model_grid.initialise_iceshelf() built-in function monarchs.core.model_output module monarchs.core.model_output.add_lat_long() built-in function monarchs.core.model_output.convert_bool_dtypes() built-in function monarchs.core.model_output.create_dimensions() built-in function monarchs.core.model_output.create_variable() built-in function monarchs.core.model_output.get_variable_dims() built-in function monarchs.core.model_output.interpolate_model_output() built-in function monarchs.core.model_output.setup_output() built-in function monarchs.core.model_output.update_model_output() built-in function monarchs.core.utils module monarchs.core.utils.add_edge_water() built-in function monarchs.core.utils.add_random_water() built-in function monarchs.core.utils.calc_mass_sum() built-in function monarchs.core.utils.check_energy_conservation() built-in function monarchs.core.utils.do_not_jit() built-in function monarchs.core.utils.find_nearest() built-in function monarchs.core.utils.get_2d_grid() built-in function monarchs.core.utils.get_num_cores() built-in function monarchs.core.utils.memory_tracker() built-in function monarchs.core.utils.spinup() built-in function monarchs.dem_utils module monarchs.dem_utils.create_dem_gaussian_test_case module monarchs.dem_utils.create_dem_gaussian_test_case.export_gaussian_dem() built-in function

monarchs.dem_utils.create_dem_gaussian_test_case.interpolate_func_to_dem() built-in function monarchs.dem_utils.create_dem_planar_test_case module monarchs.dem_utils.create_dem_planar_test_case.export_planar_dem() built-in function monarchs.dem_utils.load_dem module monarchs.dem_utils.load_dem.bounding_box_diagnostic_plots() built-in function monarchs.dem_utils.load_dem.export_DEM() built-in function monarchs.dem_utils.load_dem.generate_diagnostic_plots() built-in function monarchs.dem_utils.load_dem.get_xy_distance() built-in function monarchs.dem_utils.load_dem.interpolate_DEM() built-in function monarchs.physics module monarchs.physics.constants module monarchs.physics.firn_column module monarchs.physics.firn_column.calc_height_change() built-in function monarchs.physics.firn_column.firn_column() built-in function monarchs.physics.heateqn module monarchs.physics.heateqn.get_k_and_kappa() built-in function monarchs.physics.heateqn.heateqn() built-in function monarchs.physics.heateqn.heateqn_lid() built-in function monarchs.physics.heateqn.propagate_temperature() built-in function monarchs.physics.heateqn.solve_tridiagonal() built-in function monarchs.physics.lake module monarchs.physics.lake.calc_height_adjustment() built-in function monarchs.physics.lake.freeze_pre_lake() built-in function monarchs.physics.lake.lake_development() built-in function monarchs.physics.lake.lake_formation() built-in function monarchs.physics.lake.radiative_transfer() built-in function monarchs.physics.lake.turbulent_mixing() built-in function monarchs.physics.lateral_movement module monarchs.physics.lateral_movement.calc_available_water_ice_lens() built-in function monarchs.physics.lateral_movement.calc_available_water_lake() built-in function monarchs.physics.lateral_movement.calc_catchment_outflow() built-in function monarchs.physics.lateral_movement.find_biggest_neighbour() built-in function monarchs.physics.lateral_movement.get_neighbour_water_levels() built-in function monarchs.physics.lateral_movement.handle_edge_cases() built-in function monarchs.physics.lateral_movement.handle_invalid_neighbour_cell() built-in function monarchs.physics.lateral_movement.move_from_ice_lens() built-in function monarchs.physics.lateral_movement.move_from_lake() built-in function monarchs.physics.lateral_movement.move_to_neighbours() built-in function monarchs.physics.lateral_movement.move_water() built-in function monarchs.physics.lateral_movement.update_water_level() built-in function monarchs.physics.lateral_movement.water_fraction() built-in function monarchs.physics.lid module monarchs.physics.lid.adjust_lid_height() built-in function monarchs.physics.lid.calc_k_and_cp() built-in function monarchs.physics.lid.initialise_lid() built-in function monarchs.physics.lid.interpolate_profiles() built-in function monarchs.physics.lid.lid_development() built-in function monarchs.physics.lid.surface_freezing() built-in function monarchs.physics.lid.surface_melt() built-in function monarchs.physics.percolation module monarchs.physics.percolation.calc_liquid_mass() built-in function monarchs.physics.percolation.calc_refreezing() built-in function monarchs.physics.percolation.calc_saturation() built-in function monarchs.physics.percolation.calc_solid_mass() built-in function monarchs.physics.percolation.capillary() built-in function monarchs.physics.percolation.perc_time() built-in function monarchs.physics.percolation.percolate() built-in function monarchs.physics.regrid_column module monarchs.physics.regrid_column._integrate_piecewise_constant() built-in function monarchs.physics.regrid_column.conservative_regrid() built-in function monarchs.physics.regrid_column.merge_cells_into_lake() built-in function monarchs.physics.regrid_column.regrid_after_freeze() built-in function monarchs.physics.regrid_column.regrid_after_melt() built-in function monarchs.physics.reset_column module monarchs.physics.reset_column.combine_lid_firn() built-in function monarchs.physics.reset_column.mass_conserving_profile() built-in function monarchs.physics.snow_accumulation module monarchs.physics.snow_accumulation.densification() built-in function monarchs.physics.snow_accumulation.snowfall() built-in function monarchs.physics.solver module monarchs.physics.solver.lake_development_eqn() built-in function monarchs.physics.solver.lake_formation_eqn() built-in function monarchs.physics.solver.lake_seb_solver() built-in function monarchs.physics.solver.lid_heateqn_solver() built-in function monarchs.physics.solver.lid_seb_solver() built-in function monarchs.physics.solver.sfc_energy_lid() built-in function monarchs.physics.solver.sfc_energy_virtual_lid() built-in function monarchs.physics.solver.solve_firn_heateqn() built-in function monarchs.physics.surface_fluxes module monarchs.physics.surface_fluxes.bulk_fluxes() built-in function monarchs.physics.surface_fluxes.sfc_albedo() built-in function monarchs.physics.surface_fluxes.sfc_flux() built-in function monarchs.physics.timestep module monarchs.physics.timestep.timestep_loop() built-in function monarchs.physics.virtual_lid module monarchs.physics.virtual_lid.freeze_virtual_lid() built-in function monarchs.physics.virtual_lid.melt_virtual_lid() built-in function monarchs.physics.virtual_lid.update_virtual_lid_temperature() built-in function monarchs.physics.virtual_lid.virtual_lid_development() built-in function monarchs.run_monarchs module monarchs.run_monarchs.run_from_cli() built-in function

P

pore_closure (in module monarchs.physics.constants) prange (in module monarchs.core.error_handling) (in module monarchs.core.utils) (in module monarchs.physics.lateral_movement) PTR_FIRN_T (in module extract_args)

PTR_LAKE_T (in module extract_args) PTR_LFRAC (in module extract_args) PTR_LID_T (in module extract_args) PTR_SFRAC (in module extract_args) PTR_SIZE (in module extract_args)

R

rho_air (in module monarchs.physics.constants)

rho_ice (in module monarchs.physics.constants) rho_water (in module monarchs.physics.constants)

S

SAFE_IMPORTS (in module monarchs.core.load_model_setup) saturated_firn_albedo (in module monarchs.physics.constants) script_path (monarchs.core.load_model_setup.ModelSetup attribute) sfc_absorbed_frac (in module monarchs.physics.constants) sfc_energy_lid (in module solver_nb) sfc_energy_lid_address (in module solver_nb) sfc_energy_virtual_lid (in module solver_nb) sfc_energy_vlid_address (in module solver_nb) solver_nb module solver_nb.lake_seb_solver() built-in function solver_nb.lid_heateqn_solver() built-in function

solver_nb.lid_seb_solver() built-in function solver_nb.solve_firn_heateqn() built-in function stefan_boltzmann (in module monarchs.physics.constants) surface_energy_balance module surface_energy_balance.lake_development_eqn() built-in function surface_energy_balance.lake_formation_eqn() built-in function surface_energy_balance.sfc_energy_lid() built-in function surface_energy_balance.sfc_energy_virtual_lid() built-in function

T

tau_ice (in module monarchs.physics.constants)

tau_water (in module monarchs.physics.constants)

V

v_lid_min_thickness (in module monarchs.physics.constants)

validate_model_setup() (monarchs.core.load_model_setup.ModelSetup method)

W

wet_snow_albedo (in module monarchs.physics.constants)